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1

Propagation of user-generated content online

Gangadharbatla, Harsha, Valafar, Masoud

Journal:

International Journal of Internet Marketing and Advertising

Year:

2017

Language:

english

File:

PDF, 245 KB

english, 2017

2

Trading pounds for points: Engagement and weight loss in a mobile health intervention

Hales, Sarah, Turner-McGrievy, Gabrielle M, Wilcox, Sara, Davis, Rachel E, Fahim, Arjang, Huhns, Michael, Valafar, Homayoun

Journal:

Year:

2017

Language:

english

File:

PDF, 365 KB

english, 2017

3

Variation of Molecular Alignment as a Means of Resolving Orientational Ambiguities in Protein Structures from Dipolar Couplings

H.M Al-Hashimi, H Valafar, M Terrell, E.R Zartler, M.K Eidsness, J.H Prestegard

Journal:

Journal of Magnetic Resonance

Year:

2000

Language:

english

File:

PDF, 203 KB

english, 2000

4

Assessment of protein alignment using 1H–1H residual dipolar coupling measurements

Junfeng Wang, Homayoun Valafar, James H. Prestegard

Journal:

Journal of Magnetic Resonance

Year:

2005

Language:

english

File:

PDF, 386 KB

english, 2005

5

REDCRAFT: A tool for simultaneous characterization of protein backbone structure and motion from RDC data

Michael Bryson, Fang Tian, James H. Prestegard, Homayoun Valafar

Journal:

Journal of Magnetic Resonance

Year:

2008

Language:

english

File:

PDF, 625 KB

english, 2008

6

Efficient and accurate estimation of relative order tensors from λ-maps

Rishi Mukhopadhyay, Xijiang Miao, Paul Shealy, Homayoun Valafar

Journal:

Journal of Magnetic Resonance

Year:

2009

Language:

english

File:

PDF, 1.65 MB

english, 2009

7

CCRC-Net: an Internet-based spectral database for complex carbohydrates using artificial neural networks search engines

Faramarz Valafar, Homayoun Valafar

Journal:

TrAC Trends in Analytical Chemistry

Year:

1999

Language:

english

File:

PDF, 448 KB

english, 1999

8

Data mining and knowledge discovery in proton nuclear magnetic resonance (1H-NMR) spectra using frequency to information transformation (FIT)

H. Valafar, F. Valafar

Journal:

Knowledge-Based Systems

Year:

2002

Language:

english

File:

PDF, 194 KB

english, 2002

9

Parallelization and optimization of genetic analyses in isolation by distance web service

Julia L Turner, Scott T Kelley, James S Otto, Faramarz Valafar, Andrew J Bohonak

Journal:

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

10

Backbone resonance assignment and order tensor estimation using residual dipolar couplings

Paul Shealy, Yizhou Liu, Mikhail Simin, Homayoun Valafar

Journal:

Journal of Biomolecular NMR

Year:

2011

Language:

english

File:

PDF, 393 KB

english, 2011

11

Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target

H. Valafar, K. L. Mayer, C. M. Bougault, P. D. LeBlond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard

Journal:

Journal of Structural and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 463 KB

english, 2005

12

Backbone solution structures of proteins using residual dipolar couplings: Application to a novel structural genomics target

H. Valafar, K. L. Mayer, C. M. Bougault, P. D. LeBlond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard

Journal:

Journal of Structural and Functional Genomics

Year:

2005

Language:

english

File:

PDF, 339 KB

english, 2005

13

REDCAT: a residual dipolar coupling analysis tool

Homayoun Valafar, James H Prestegard

Journal:

Journal of Magnetic Resonance

Year:

2004

Language:

english

File:

PDF, 1.39 MB

english, 2004

14

Rapid classification of protein structure models using unassigned backbone RDCs and probability density profile analysis (PDPA)

Sonal Bansal, Xijiang Miao, Michael W.W. Adams, James H. Prestegard, Homayoun Valafar

Journal:

Journal of Magnetic Resonance

Year:

2008

Language:

english

File:

PDF, 419 KB

english, 2008

15

Estimation of relative order tensors, and reconstruction of vectors in space using unassigned RDC data and its application

Xijiang Miao, Rishi Mukhopadhyay, Homayoun Valafar

Journal:

Journal of Magnetic Resonance

Year:

2008

Language:

english

File:

PDF, 933 KB

english, 2008

16

Simultaneous structure and dynamics of a membrane protein using REDCRAFT: Membrane-bound form of Pf1 coat protein

Paul Shealy, Mikhail Simin, Sang Ho Park, Stanley J. Opella, Homayoun Valafar

Journal:

Journal of Magnetic Resonance

Year:

2010

Language:

english

File:

PDF, 690 KB

english, 2010

17

Pattern Recognition Techniques in Microarray Data Analysis : A Survey

FARAMARZ VALAFAR

Journal:

Annals of the New York Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 2.67 MB

english, 2002

18

Datamining Protein Structure Databanks for Crystallization Patterns of Proteins

HOMAYOUN VALAFAR, JAMES H. PRESTEGARD, FARAMARZ VALAFAR

Journal:

Annals of the New York Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 1.26 MB

english, 2002

19

Preface

Faramarz Valafar

Journal:

Annals of the New York Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 24 KB

english, 2002

20

Assignment of protein backbone resonances using connectivity, torsion angles and13Cαchemical shifts

Laura C. Morris, Homayoun Valafar, James H. Prestegard

Journal:

Journal of Biomolecular NMR

Year:

2004

Language:

english

File:

PDF, 220 KB

english, 2004

21

PNS modules for the synthesis of parallel self-organizing hierarchical neural networks

Faramarz Valafar, Okan K. Ersoy

Journal:

Circuits, Systems, and Signal Processing

Year:

1996

Language:

english

File:

PDF, 1.32 MB

english, 1996

22

Predicting the effectiveness of hydroxyurea in individual sickle cell anemia patients

Homayoun Valafar, Faramarz Valafar, Alan Darvill, Peter Albersheim, Abdullah Kutlar, Kristy F. Woods, John Hardin

Journal:

Artificial Intelligence in Medicine

Year:

2000

Language:

english

File:

PDF, 414 KB

english, 2000

23

Empirical comparison of cross-platform normalization methods for gene expression data

Jason Rudy, Faramarz Valafar

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.83 MB

english, 2011

24

Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites

Jill L Wegrzyn, Thomas M Drudge, Faramarz Valafar, Vivian Hook

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 706 KB

english, 2008

25

Improving reverse vaccinology with a machine learning approach

Brett N. Bowman, Paul R. McAdam, Sandro Vivona, Jin X. Zhang, Tiffany Luong, Richard K. Belew, Harpal Sahota, Donald Guiney, Faramarz Valafar, Joshua Fierer, Christopher H. Woelk

Journal:

Year:

2011

Language:

english

File:

PDF, 738 KB

english, 2011

26

An artificial neural network approach to improving the correlation between protein energetics and the backbone structure

Fawcett, Timothy M., Irausquin, Stephanie J., Simin, Mikhail, Valafar, Homayoun

Journal:

Year:

2013

Language:

english

File:

PDF, 747 KB

english, 2013

27

Multiple structure alignment with msTALI

Paul Shealy, Homayoun Valafar

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 896 KB

english, 2012

28

[Annual Reports on NMR Spectroscopy] Annual Reports on NMR Spectroscopy Volume 76 Volume 76 || A Review of REDCRAFT

Valafar, Homayoun

Year:

2012

Language:

english

File:

PDF, 1.71 MB

english, 2012

29

[IEEE International Conference on Neural Networks - Washington, DC, USA (10-16 July 1999)] IJCNN'99. International Joint Conference on Neural Networks. Proceedings (Cat. No.99CH36339) - Parallel, self organizing, consensus neural networks

Valafar, H., Valafar, F., Ersoy, O.

Year:

1999

Language:

english

File:

PDF, 343 KB

english, 1999

30

On detecting co-resident cloud instances using network flow watermarking techniques

Bates, Adam, Mood, Benjamin, Pletcher, Joe, Pruse, Hannah, Valafar, Masoud, Butler, Kevin

Journal:

International Journal of Information Security

Year:

2014

Language:

english

File:

PDF, 895 KB

english, 2014

31

Sizing up online social networks

Rejaie, Reza, Torkjazi, Mojtaba, Valafar, Masoud, Willinger, Walter

Journal:

Year:

2010

Language:

english

File:

PDF, 383 KB

english, 2010

32

Nuclear Magnetic Resonance in the Era of Structural Genomics †

Prestegard, J. H., Valafar, H., Glushka, J., Tian, F.

Journal:

Year:

2001

Language:

english

File:

PDF, 113 KB

english, 2001

33

Advances in the REDCAT software package

Chris Schmidt,Stephanie J Irausquin,Homayoun Valafar

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

34

A Dipolar Coupling Based Strategy for Simultaneous Resonance Assignment and Structure Determination of Protein Backbones

Tian, Fang, Valafar, Homayoun, Prestegard, James H.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 148 KB

english, 2001

35

NMR Structural Studies Reveal a Novel Protein Fold for MerB, the Organomercurial Lyase Involved in the Bacterial Mercury Resistance System †,‡

Di Lello, Paola, Benison, Gregory C., Valafar, Homayoun, Pitts, Keith E., Summers, Anne O., Legault, Pascale, Omichinski, James G.

Journal:

Year:

2004

Language:

english

File:

PDF, 523 KB

english, 2004

36

Predicting Extensively Drug-Resistant Mycobacterium tuberculosis Phenotypes with Genetic Mutations

Rodwell, T. C., Valafar, F., Douglas, J., Qian, L., Garfein, R. S., Chawla, A., Torres, J., Zadorozhny, V., Kim, M. S., Hoshide, M., Catanzaro, D., Jackson, L., Lin, G., Desmond, E., Rodrigues, C., Ei

Journal:

Journal of Clinical Microbiology

Year:

2014

Language:

english

File:

PDF, 267 KB

english, 2014

37

Phage-Induced Alignment of Membrane Proteins Enables the Measurement and Structural Analysis of Residual Dipolar Couplings with Dipolar Waves and λ-Maps

Park, Sang Ho, Son, Woo Sung, Mukhopadhyay, Rishi, Valafar, Homayoun, Opella, Stanley J.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 813 KB

english, 2009

38

Conformational Differences in Liganded and Unliganded States of Galectin-3 †

Umemoto, Kimiko, Leffler, Hakon, Venot, Andre, Valafar, Homay, Prestegard, J. H.

Journal:

Year:

2003

Language:

english

File:

PDF, 167 KB

english, 2003

39

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - An Artificial Neural Network Based Approach for Identification of Native Protein Structures Using an Extended Forcefield

Fawcett, Timothy Matthew, Irausquin, Stephanie, Simin, Mikhail, Valafar, Homayoun

Year:

2011

File:

PDF, 394 KB

2011

40

[IEEE 1998 2nd International Conference Biomedical Engineering Days - Istanbul, Turkey (20-22 May 1998)] Proceedings of the 1998 2nd International Conference Biomedical Engineering Days - Artificial neural networks in chemotype analysis of Cryptococcus neoformans

Valafar, H., Valafar, F., Cherniak, R., Morris, L.

Year:

1998

Language:

english

File:

PDF, 340 KB

english, 1998

41

[IEEE The 2006 IEEE International Joint Conference on Neural Network Proceedings - Vancouver, BC, Canada (2006.07.16-2006.07.21)] The 2006 IEEE International Joint Conference on Neural Network Proceedings - Reconstruction of Gene Regulatory Networks from Temporal Microarray Data Using Pattern Recognition Techniques

Salim, A., Valafar, F.

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

42

[IEEE IEEE International Symposium on Circuits and Systems - ISCAS '94 - London, UK (30 May-2 June 1994)] Proceedings of IEEE International Symposium on Circuits and Systems - ISCAS '94 - PNS modules for the synthesis of parallel self-organizing hierarchical neural networks

Valafar, F., Ersoy, O.K.

Year:

1994

Language:

english

File:

PDF, 322 KB

english, 1994

43

[IEEE International Conference on Neural Networks - Washington, DC, USA (10-16 July 1999)] IJCNN'99. International Joint Conference on Neural Networks. Proceedings (Cat. No.99CH36339) - Prediction of a patient's response to a specific drug treatment using artificial neural networks

Valafar, H., Valafar, F.

Year:

1999

Language:

english

File:

PDF, 438 KB

english, 1999

44

DYNAFOLD: A DYNAMIC PROGRAMMING APPROACH TO PROTEIN BACKBONE STRUCTURE DETERMINATION FROM MINIMAL SETS OF RESIDUAL DIPOLAR COUPLINGS

MUKHOPADHYAY, RISHI, IRAUSQUIN, STEPHANIE, SCHMIDT, CHRISTOPHER, VALAFAR, HOMAYOUN

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2014

Language:

english

File:

PDF, 455 KB

english, 2014

45

Prognostic significance of novel katG mutations in Mycobacterium tuberculosis

Valafar, F., Ramirez-Busby, S.M., Torres, J., Paul, Lynthia V., Rodwell, T.C., Victor, T.C., Rodrigues, C., Gler, M.T., Crudu, V., Catanzaro, T.

Journal:

International Journal of Mycobacteriology

Year:

2015

Language:

english

File:

PDF, 289 KB

english, 2015

46

Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings

Simin, Mikhail, Irausquin, Stephanie, Cole, Casey A., Valafar, Homayoun

Journal:

Journal of Biomolecular NMR

Year:

2014

Language:

english

File:

PDF, 4.47 MB

english, 2014

47

Rapid classification of a protein fold family using a statistical analysis of dipolar couplings

Valafar, H., Prestegard, J. H.

Journal:

Year:

2003

Language:

english

File:

PDF, 114 KB

english, 2003

48

The Global Consortium for Drug-resistant Tuberculosis Diagnostics (GCDD): design of a multi-site, head-to-head study of three rapid tests to detect extensively drug-resistant tuberculosis

Hillery, Naomi, Groessl, Erik J, Trollip, Andre, Catanzaro, Donald, Jackson, Lynn, Rodwell, Timothy C, Garfein, Richard S, Lin, S-Y, Eisenach, Kathleen, Ganiats, Theodore G, Park, Daniel, Valafar, Far

Journal:

Year:

2014

Language:

english

File:

PDF, 427 KB

english, 2014

49

TALI: LOCAL ALIGNMENT OF PROTEIN STRUCTURES USING BACKBONE TORSION ANGLES

MIAO, XIJIANG, WADDELL, PETER J., VALAFAR, HOMAYOUN

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 2.40 MB

english, 2008

50

A Gene Wiki for Community Annotation of Gene Function

Huss, Jon W., Orozco, Camilo, Goodale, James, Wu, Chunlei, Batalov, Serge, Vickers, Tim J., Valafar, Faramarz, Su, Andrew I.

Journal:

Year:

2008

Language:

english

File:

PDF, 2.51 MB

english, 2008

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